------- SECIS element -- id:1 -- grade:B ---- Chromosome = CM007955.1:subseq_28228487,135498_ Strand = + Positions = 119025 - 119085 Found by: Infernal (score=14.63) Covels (score=5.76) Stem2 length = 8 Apical loop length = 9 Insertion in stem2 = 1, 0 Free Energy = -11.4 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .((((((((---....([[{({((((.(((.......----------..)))))))})}]])----..-.)))))))). target GUACUGAAU---UUGAUGAUGAGCAUACCUAGCAAAC----------AGGGGAUGUCCUGAG----CA-CAUUCGGUGA **** ^^ **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = CM007955.1:subseq_28228487,135498_ Strand = - Positions = 124913 - 124836 Found by: Infernal (score=10.39) Stem2 length = 8 Apical loop length = 21 Insertion in stem2 = 0, 0 Free Energy = -8.5 ..(((((((.......(((((((((((((((...................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...([({(((--....{[[{{(((({((((.....................))))}))))}}]]}..--...)))})])... target CAGAGAGAAG--UCUAUGACUAGGGUGGCUGGAGUCUUUGACAAUUUUUAGGGCCUUCCUCUGACAC--CACCUUGUAUAGA **** ****